rs30265392 SNP Detail

Summary

• ID
  rs30265392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144996118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTT GGCTATAGAT GGTGACTGAA
  R
  CAACAGTAAT AAAGAGAAAA ATCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss45909816	mCV23990605	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		A
ss48141290	NES11826336	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	A		A	A	A	A	G
ss133960880	ENSMUSSNP6910718	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs30265392					SNP	G	G	G	A	G	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141290	NES11826336	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144996118 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	1179 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Rr145932	regulatory region 145932	1117 bp distal
Rr148333	regulatory region 148333	283 bp proximal
Tssr2055	transcription start site region 2055	1313 bp upstream
Tssr59519	transcription start site region 59519	1844 bp downstream
Tssr64036	transcription start site region 64036	1800 bp upstream
Tssr64037	transcription start site region 64037	1750 bp upstream
Tssr64038	transcription start site region 64038	1722 bp upstream
Tssr64039	transcription start site region 64039	1705 bp upstream
Tssr64040	transcription start site region 64040	1686 bp upstream
Tssr64041	transcription start site region 64041	1663 bp upstream
Tssr64042	transcription start site region 64042	1645 bp upstream
Tssr64043	transcription start site region 64043	1587 bp upstream
Tssr64044	transcription start site region 64044	1571 bp upstream
Tssr64045	transcription start site region 64045	1539 bp upstream