rs30268258 SNP Detail

Summary

• ID
  rs30268258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121580504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCCCTC AGAGGCAGGC
  AGATTCTGTG AGTTTGAGTC CAGGCTGGTC TACACATTGA GATTCAGGTC ACCTAAGGCT
  ACATACTGAG GCCCTATCTA AAAAGAAAAA AAAAAAAAAA TTTAAGCTGA GTAATGAGAC
  CTAAGCAGTA GTCCTGGCTG GCCAATCCTG AGACTGTGGC ACATGAGAGA AGTATCTAAA
  Y
  CAGTCTGCAA AAGCCTCAGG TCCTTTGACA CAGTTCAACA AAAGCAGTTC CTCTTTTATC
  TGCTTTTTAT CTGGTTTATG CATTTACCTG CTTTTCAAAT GCATACTAAG AATCTAAAAT
  AAGGGTTCCA CTCACTACTT ATTTAAGGGT TTGAAAGTTG GGCTGGAGCG ATGGCTCAGC
  CATAAAAGGC ACTTGCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46930872	NES10687025	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30268258					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930872	NES10687025	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121580504 () rs orientation: forward

Symbol	Name	Function Class
4633401B06Rik	RIKEN cDNA 4633401B06 gene	645 bp downstream
Abcd3	ATP-binding cassette, sub-family D member 3	within coordinates
Tssr35428	transcription start site region 35428	955 bp downstream