rs30268317 SNP Detail

Summary

• ID
  rs30268317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:96538167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTTAGGTG ACGTGTCCCC ACCTTGCACA CATTAATGCC
  ATTGTAACTG TTTGGGTCAC GTTCCCTTTC TTGTTTTTTC TGGGCTAGAG ACCATTGTAT
  Y
  TCTCTCTCCC ACAGGACATC TCAGGAAGAC CCTTGTGAGG TACCCGCTAG GCTCTGGAAC
  TATAAGAGAG TAAACTTGAG ATCCTTATAG TTGTTTTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45911139	mCV23979782	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss51778147	NES14790904	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	C	T	T	C	T	T	C	C
ss133411744	ENSMUSSNP4588522	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30268317					SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51778147	NES14790904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:96538167 () rs orientation: forward

Symbol	Name	Function Class
Gm26011	predicted gene, 26011	344 bp upstream
Tafa1	TAFA chemokine like family member 1	within coordinates