rs30268818 SNP Detail

Summary

• ID
  rs30268818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72719158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA CTCTGTCAGT GTTCAAGAAC
  Y
  TCGTCTTTGG GAAGGCTCGT CTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45909754	mCV25135585	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss51693348	NES14824372	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C		T	C	T	T		T	T	T	C		T
ss133286977	ENSMUSSNP3616337	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss321822712	CHEV_6_72692169	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30268818					SNP	T	T	C	T	T	C	T	T	C	T	T	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51693348	NES14824372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72719158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17550	CpG island 17550	1309 bp distal
Gm31249	predicted gene, 31249	1842 bp upstream
Gm67726	predicted gene, 67726	within coordinates
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates
Tssr57163	transcription start site region 57163	1845 bp upstream