rs30268857 SNP Detail

Summary

• ID
  rs30268857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127797101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGGCAA ATGTATTGTA
  TTTCATGTCG AATAAGCTTA GAGATTTTTT TTTATTTTTT TATTTTTTGC ATGTCTACAT
  GAAACCCAAT CTGTGCACAA CCAGGAGAGC CCGAAGGAAT GGTGGCTGGA ACTCCTGATG
  GATGGGAGGA GTGCCACACC GGGCACTCCA GAGGGCAGCA TATCTGCTTC CCACCAGCAG
  Y
  GAGACCACTG TGTGCCTCAG TTTGAATAGC AGAGAAGCGT AGGTTTATAT AGCTACTTAT
  CTATTTGTTT ACAACTTAAA AATGATGTAT TTGACAAATG AGCTTCTGTT TTCTTCAGAG
  GATACTGAGA CTATTTTCTC AGGTCCTGCC TCTCAGGTGA TAGCACTCCA CAGTAGCTTG
  CTTGCAGCTC ACTTCCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45413470	mCV25235079	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss320959107	CHEV_3_127706370	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30268857					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127797101 () rs orientation: forward

Symbol	Name	Function Class
Rr52	regulatory region 52	within coordinates
Rr584916	regulatory region 584916	1083 bp distal
Rr584917	regulatory region 584917	1370 bp distal