rs30268860 SNP Detail

Summary

• ID
  rs30268860
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100096600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCCTACCC ATTCTCCAGG TTTCAGATGA AAGCAAATGT
  CTCTCAAGCC TTACCTGTTG GGTCCAGAAT GCCTGCCTCT GCTGCTTTCC TTTTTCACAG
  M
  GTGGCACAGC GTACCATTCT GTCGATAGGG CACTTCCATG GTACCAGTCT CTAGTCATTG
  AATGGGAGTT GGACCAGACA TCTCAGCAGT CCCTTACAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45413473	mCV23824938	ABI	CRAMUS_MOUSE	f	SNP		C	A				C		A
ss46800684	NES10745459	PERLEGEN	MM_PANEL2	f	SNP	C			A	A	A		C	A	C	C		C	A	C		C
ss135538220	ENSMUSSNP5121425	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						A
ss320848247	CHEV_3_99993207	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30268860					SNP	C	C	A	A	A	A	C	C	A	C	C	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46800684	NES10745459	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100096600 () rs orientation: forward

Symbol	Name	Function Class
Gdap2	ganglioside-induced differentiation-associated-protein 2	within coordinates
Rr64421	regulatory region 64421	1 bp proximal
Rr69692	regulatory region 69692	601 bp proximal
Rr82369	regulatory region 82369	176 bp proximal