rs30269109 SNP Detail

Summary

• ID
  rs30269109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48651798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACT TAAAAAGTTG AGTAGGCCCA
  Y
  GCCTGATTTG GGTAGGGAGC AGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45911243	mCV23169278	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss133165778	ENSMUSSNP1244138	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321794333	CHEV_6_48624863	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30269109					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48651798 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	1286 bp upstream
Gm46958	predicted gene, 46958	968 bp downstream
Rr629719	regulatory region 629719	within coordinates
Rr629720	regulatory region 629720	784 bp proximal
Tssr56160	transcription start site region 56160	31 bp downstream
Tssr56161	transcription start site region 56161	337 bp upstream
Tssr56162	transcription start site region 56162	1250 bp upstream
Tssr56163	transcription start site region 56163	1296 bp upstream
Tssr56164	transcription start site region 56164	1329 bp upstream
Tssr56165	transcription start site region 56165	1544 bp upstream