rs30269180 SNP Detail

Summary

• ID
  rs30269180
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:96538421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAAGATTT CACTTTACTT CAAATTTACA GTCATTCCGA
  GCTCTTAATT CCAACTGAGA GGAAAACAGA TAAATGTGTT ATTTATGCCA TGATGATACA
  M
  AATAAAATAG TGATCCGTGG CCTGTAAACT AAAAGGGAGG TGACAGCAAT GGCATACTGG
  CTAAAAGGTA TATAAAGAAC AGCTTTTTCT TTCAGACTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45910552	mCV23979791	ABI	CRAMUS_MOUSE	f	SNP		C	C			C	A
ss51778138	NES14790907	PERLEGEN	MM_PANEL2	f	SNP	C			C	C			C	C	A	C	C	A
ss133411753	ENSMUSSNP3833460	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30269180					SNP	C	C	C	C	C	C	A	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51778138	NES14790907	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:96538421 () rs orientation: forward

Symbol	Name	Function Class
Gm26011	predicted gene, 26011	598 bp upstream
Tafa1	TAFA chemokine like family member 1	within coordinates