rs30269349 SNP Detail

Summary

• ID
  rs30269349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121580931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATAAAAT AAAAATAAAC TCTAATAAGA GTTTGAAAGC
  CATTATGATA TGAGTATATT GCGCATATAT ATTAAAGAGA GCTTGTTTGA AGTGACCACA
  Y
  ATCTTGTATG TGGTCACAGA ATTTTCTTTT CAGAGAATTT TTATTAGTAT TCCCGAATGT
  AATTTTATAA CTATATATAA ATATATTATA AATATCTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45438376	mCV24754096	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss46930884	NES10687004	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C		C	C		T	C	C		C
ss135729201	ENSMUSSNP2417250	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss320905842	CHEV_3_121490200	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30269349					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930884	NES10687004	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121580931 () rs orientation: forward

Symbol	Name	Function Class
4633401B06Rik	RIKEN cDNA 4633401B06 gene	218 bp downstream
Abcd3	ATP-binding cassette, sub-family D member 3	within coordinates
Tssr35428	transcription start site region 35428	528 bp downstream