rs30269669 SNP Detail

Summary

• ID
  rs30269669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:59306602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGAGTCC TGAGTGAGTT
  ATCTGTACCT AATGAGAATT AATGGCTTTG TAGACTAGCC CGTTTGAATG AAGAGCAGCT
  AGGAGCTTGC AGGGCAGTTT GCTGATGTGT AAGCAGATGT GGTTCTCAAC CACTAACCAC
  ACGAAATTGG GAAACTCTGA AAATGTACTA CCCATTGTAG CAGTAGCTGA CCATACGGGG
  Y
  GATTTAAATC AGAACTAATT GAAATTATAT AAAACTGAAA ATGCATTTCC TCAGTCACAC
  TAGCCACATT TCAAGTGCCC CCAAATCTTA CGTGGTCATT GTTTACCATG AAAGTGATAA
  AGAATATTCC TTATAGCAGA AGTCTATGAG GTATCAGTTA CATGAAAATT AAAATGGCGA
  AAATAGATGG AAAACCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39664490	mCV23241559	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147209013	ENSMUSSNP5626552	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30269669					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:59306602 () rs orientation: forward

Symbol	Name	Function Class
Chsy3	chondroitin sulfate synthase 3	1810 bp upstream
Cpgi10086	CpG island 10086	1134 bp proximal
Gm54033	predicted gene, 54033	within coordinates
Gm58413	predicted gene, 58413	within coordinates
Rr538516	regulatory region 538516	1630 bp proximal
Tssr151236	transcription start site region 151236	1803 bp upstream
Tssr151237	transcription start site region 151237	1878 bp upstream
Tssr151238	transcription start site region 151238	1942 bp upstream