rs30269747 SNP Detail

Summary

• ID
  rs30269747
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:28422834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA GAGAGAACAT ATTCCCACAG
  K
  TTGTCCTCTG AGAGCTACAC CTCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss45910654	mCV23781313	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G
ss133088250	ENSMUSSNP3068679	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G			G
ss321773888	CHEV_6_28372835	CHEVERUD	SCREENING_POP	f	SNP					G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs30269747					SNP	T	T	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28422834 () rs orientation: forward

Symbol	Name	Function Class
Arf5	ARF GTPase 5	769 bp upstream
Cpgi17215	CpG island 17215	872 bp distal
Cpgi17216	CpG island 17216	395 bp proximal
Gcc1	golgi coiled coil 1	within coordinates
Rr399587	regulatory region 399587	920 bp downstream
Rr627380	regulatory region 627380	621 bp distal
Rr627381	regulatory region 627381	912 bp distal
Rr627382	regulatory region 627382	235 bp proximal
Rr627383	regulatory region 627383	1296 bp proximal
Tssr55188	transcription start site region 55188	1029 bp downstream
Tssr55189	transcription start site region 55189	699 bp upstream
Tssr55190	transcription start site region 55190	704 bp upstream
Tssr55191	transcription start site region 55191	1502 bp upstream
Tssr55192	transcription start site region 55192	1737 bp upstream
Tssr60058	transcription start site region 60058	1293 bp upstream
Tssr60059	transcription start site region 60059	1243 bp upstream
Tssr60060	transcription start site region 60060	1094 bp upstream