rs30271297 SNP Detail

Summary

• ID
  rs30271297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121582786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA GAATGTAATT TTTCATTCTA
  Y
  TCCTTAAGAG ATAAAGTAAT ATTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45534511	mCV24754095	ABI	CRAMUS_MOUSE	f	SNP	C	C				T
ss46930938	NES10686855	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T		C			T	T
ss135729225	ENSMUSSNP3698602	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss320905854	CHEV_3_121492055	CHEVERUD	SCREENING_POP	f	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30271297					SNP	C	C	T	T	T	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930938	NES10686855	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121582786 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4633401B06Rik	RIKEN cDNA 4633401B06 gene			565 bp upstream
Abcd3	ATP-binding cassette, sub-family D member 3			Intron
				Noncoding-Transcript-Variant
Rr584170	regulatory region 584170			1370 bp proximal
Tssr35428	transcription start site region 35428			1321 bp upstream