rs30271299 SNP Detail

Summary

• ID
  rs30271299
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121582842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACC ATTCTTTATG TGATTCTATC
  S
  AAATAACATA ATATTTGTAG TAGTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45470735	mCV24754094	ABI	CRAMUS_MOUSE	f	SNP	G	G					C
ss46930941	NES10686856	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C	C		C	G	C		C	G	C		C
ss135729228	ENSMUSSNP1482681	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320905855	CHEV_3_121492111	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30271299					SNP	G	G	C	G	C	C	C	C	G	C	G	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930941	NES10686856	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121582842 () rs orientation: forward

Symbol	Name	Function Class
4633401B06Rik	RIKEN cDNA 4633401B06 gene	621 bp upstream
Abcd3	ATP-binding cassette, sub-family D member 3	within coordinates
Rr584170	regulatory region 584170	1314 bp proximal
Tssr35428	transcription start site region 35428	1377 bp upstream