rs30271418 SNP Detail

Summary

• ID
  rs30271418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90712982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT GAACTGATTT CACTGGGAGG
  R
  ACCTACCAGG AAGACCCCCG AGACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45911478	mCV25225645	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss321852507	CHEV_6_90685994	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30271418					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90712982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17726	CpG island 17726	within coordinates
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr399763	regulatory region 399763	1737 bp upstream
Rr634305	regulatory region 634305	289 bp proximal
Rr634306	regulatory region 634306	1562 bp proximal
Rr634307	regulatory region 634307	1610 bp proximal
Tssr62039	transcription start site region 62039	112 bp downstream
Tssr62040	transcription start site region 62040	756 bp downstream
Tssr62041	transcription start site region 62041	778 bp downstream