rs30271665 SNP Detail

Summary

• ID
  rs30271665
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86414576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG TTGATGCTCT CTGGTCACCA
  S
  TTGAGGCAGT TGCTAGGAAC TAACT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45912162	mCV22849484	ABI	CRAMUS_MOUSE	f	SNP		G					C		G
ss51753271	NES14806737	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	C	G	G		C	G	G	C		C	G	C	C		C
ss133357135	ENSMUSSNP1658715	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321846509	CHEV_6_86387588	CHEVERUD	SCREENING_POP	f	SNP												C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30271665					SNP	G	G	C	C	G	G	C	C	G	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51753271	NES14806737	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86414576 () rs orientation: forward

Symbol	Name	Function Class
C87436	expressed sequence C87436	780 bp upstream
Cpgi17664	CpG island 17664	496 bp proximal
Gm44790	predicted gene 44790	within coordinates
Gm66311	predicted gene, 66311	within coordinates
Rr368111	regulatory region 368111	920 bp upstream
Rr399735	regulatory region 399735	593 bp upstream
Tssr57468	transcription start site region 57468	766 bp upstream
Tssr57469	transcription start site region 57469	821 bp upstream
Tssr57470	transcription start site region 57470	1072 bp upstream
Tssr57471	transcription start site region 57471	1120 bp upstream
Tssr57472	transcription start site region 57472	1154 bp upstream
Tssr61792	transcription start site region 61792	1024 bp downstream