rs30271969 SNP Detail

Summary

• ID
  rs30271969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48531871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC CAGGCACTGC TCTGAGTGCA
  R
  TTAACAGACA GAACGCTTTA ACCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45911776	mCV23164408	ABI	CRAMUS_MOUSE	f	SNP	G	G						G		A
ss51307119	NES13774498	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	G	A		G	A	A	G		G	G	G	G		G
ss133164135	ENSMUSSNP3478805	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								A
ss321793666	CHEV_6_48504936	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30271969					SNP	G	G	G	A	A	G	A	G	G	A	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51307119	NES13774498	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48531871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	within coordinates
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	164 bp upstream
Lrrc61	leucine rich repeat containing 61	within coordinates
Rr399635	regulatory region 399635	119 bp downstream
Rr629686	regulatory region 629686	1719 bp distal
Rr629687	regulatory region 629687	175 bp distal
Rr629688	regulatory region 629688	122 bp distal
Rr629689	regulatory region 629689	within coordinates
Tssr56137	transcription start site region 56137	92 bp downstream
Tssr56138	transcription start site region 56138	within coordinates
Tssr60734	transcription start site region 60734	271 bp upstream
Tssr60735	transcription start site region 60735	250 bp upstream
Tssr60736	transcription start site region 60736	206 bp upstream