rs30272133 SNP Detail

Summary

• ID
  rs30272133
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32608265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACTTGCAT CCTGAGCGCC CCTGTCATAA GTCCCTTAGA
  GCCTCACTCC TCTTTTCTAG GTTGAGGGGG AGGTAGTGGG AGGAGAAACG AACAGAATCT
  K
  TTTAACTTTG GGAAAGTCTG ATTCCTTCCT GGTCAGTGTA GTAACTAGCT TTACTGCCTT
  TCTATTCTGC CATCTTTTGG CCTCCCGTAC CAAAGGTCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46389505	mCV22734426	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss136249706	ENSMUSSNP1464949	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30272133					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32608265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	425 bp distal
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr401307	regulatory region 401307	893 bp downstream
Tssr84270	transcription start site region 84270	1283 bp downstream
Tssr84271	transcription start site region 84271	1264 bp downstream
Tssr84272	transcription start site region 84272	1250 bp downstream
Tssr84273	transcription start site region 84273	1194 bp downstream
Tssr84274	transcription start site region 84274	1153 bp downstream
Tssr84275	transcription start site region 84275	874 bp downstream
Tssr84276	transcription start site region 84276	93 bp downstream
Tssr84277	transcription start site region 84277	17 bp upstream
Tssr84278	transcription start site region 84278	958 bp upstream
Tssr84279	transcription start site region 84279	1278 bp upstream