rs30272379 SNP Detail

Summary

• ID
  rs30272379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121581919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGAATA ATCAAGTTAT
  TTTTATTCCC GAAGACTCGA GGACATTCAT GAGAGATGGC TTGGCGCTCT AAAAGCAATG
  CTCATAACAA AGTAGACGAC GATAAGCCCG TCTTTGTGGG TGGACAGAGC AGCCAGAGCG
  GAAGGATCCT CGTCCGTCCA CACTGTGGCT TAACTAGCTT CATCCCTACA GATGAATGTG
  Y
  CCACTCCACA CACTTCTCAG CCATTACTAA CAAATCAGCC TTAAATATGA AAAAATGAAA
  TGCAGCACAT TAATATCACT CACAAATCTC TTGGAACCCT AAGCCTACTT AGAAGGGCCA
  AAAAGAAAAA AACAAATTCA TTCACAGTGT AACTCTAATA TTGAGACAAA AAGTATTAAT
  TTTTCAAATA AAATTGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46930914	NES10686908	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30272379					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930914	NES10686908	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121581919 () rs orientation: forward

Symbol	Name	Function Class
4633401B06Rik	RIKEN cDNA 4633401B06 gene	within coordinates
Abcd3	ATP-binding cassette, sub-family D member 3	within coordinates
Tssr35428	transcription start site region 35428	454 bp upstream