rs30272968 SNP Detail

Summary

• ID
  rs30272968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45315640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGTGTGGG GGCAGACTCT
  CACAGGGCGG GGCTGCTGTC CTTCTGTGTG AGTGTGTGTT GCTGGGCTCC GGAAGCTCGG
  GAGAGCTGCG TGAGTGCTTT TAAGCCATCC AGCCAGGGCT GGTCTCTGCT CTTACCACTT
  AGCAGGGAGT GGCTGGCTCT CCGATGGTAC CAGCAAACAA AAGGCTAATG CCTGCCATTT
  R
  TCAAGCAGTA CAGAAACAAT GGTACCCACC ACTGTCCTAG GCCATATTCT GAAGTGCCTA
  TCTCAGTCCC CACAACCTCC CAGAGTCCTG TGCCCTGCCC ACTGTATAGA TGACAAGATA
  GACATGGAGA GATAAACAAA TCGGCAATGG AAAGGTAAGC AAATGACAAA GGCAAGTGGT
  GAGTGCCAGT GTCCTGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46389599	mCV25163691	ABI	CRAMUS_MOUSE	f	SNP		G	A					A	A
ss52013355	NES15030297	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	G	G	A	A	G	A
ss136411234	ENSMUSSNP6619355	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30272968					SNP	G	G	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013355	NES15030297	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45315640 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195107	regulatory region 195107	961 bp proximal
Rr206351	regulatory region 206351	1160 bp proximal
Rr209195	regulatory region 209195	361 bp proximal
Tssr84783	transcription start site region 84783	1768 bp downstream
Tssr84784	transcription start site region 84784	1716 bp downstream
Tssr84785	transcription start site region 84785	1184 bp downstream
Tssr84786	transcription start site region 84786	1153 bp downstream
Tssr84787	transcription start site region 84787	1132 bp downstream
Tssr84788	transcription start site region 84788	1101 bp downstream
Tssr84789	transcription start site region 84789	1074 bp downstream
Tssr84790	transcription start site region 84790	1593 bp upstream
Tssr84791	transcription start site region 84791	1724 bp upstream
Tssr84792	transcription start site region 84792	1772 bp upstream