rs30273545 SNP Detail

Summary

• ID
  rs30273545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121616636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGTCCCTG TGCTTGTTAA AGTACTACCG AATTCAAGGA
  GTTACTAGGA TTAGACACTT GCGTCTGTAA CCGTTGAGCC TGAGCAGCAC ATAGAAAGCC
  Y
  TACAGATTGC AACAGTTGTC ATTAATGCTT TGATGATTCC TTGCCCCTGG TTAGAAACTC
  AATGTGTTCC TACATATTAT AGAATGTTGA GAGGAATCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
ss46931235	NES10684707	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T		C	T
ss320906106	CHEV_3_121525905	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
rs30273545					SNP	T	T	T	T	T	T	C	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931235	NES10684707	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121616636 () rs orientation: forward

Symbol	Name	Function Class
D3Mit347	DNA Segment, Chr 3 Massachusetts Institute of Technology 347	78 bp proximal
Gm42776	predicted gene 42776	457 bp downstream
Rr584178	regulatory region 584178	965 bp distal
Tssr31460	transcription start site region 31460	941 bp upstream