rs30273648 SNP Detail

Summary

• ID
  rs30273648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146165265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAGAGG GCATCAGATC
  CCATTACAGA TGGTTGTGAG CCACCATGTG GTTGCTGGGA GTGAAATCAG GACCTCTGGA
  AGAGCAGTCA GTGCTCTAAA CTGTTGAGCC ATCTCTCCAG CCCCATAGCA TATCTTTTAT
  TTCTCCTCTA GTTCTTTTTT TCTCTTTTTC TTTTCCTTTT TCTTTTTGGA GACAGGGTCT
  Y
  ACTATGTATG CCCAAACCAG AGCTTTTGAA GATTGCTGCT GGCTTGTGTT CTCTAGTTCA
  TTTTTTCTTT TTTCTACTTA TATCTTTTAT TTCTAACAGT TTTATTATTT TTCTCATTTG
  GCTTTTAACA TTTGCTCAAT AATGACACGC AAATGTTTGA ATTCCTAGGA TGACATTTGC
  ACCATTACAA AGGTCCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45413889	mCV24074679	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss136044663	ENSMUSSNP6951594	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss321010479	CHEV_3_146122474	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30273648					SNP	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146165265 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	Intron
Rr587031	regulatory region 587031	183 bp distal
Spata1	spermatogenesis associated 1	Intron