rs30274393 SNP Detail

Summary

• ID
  rs30274393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44391203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGGAGG GGGATTCCAG
  GGACTAGTGA CTAGTGAGGG GCTCTGGGCA ATCTGACTGC AGCCTCGAAA ACCCCACCCT
  CAGAACTCTG ACAGGCAGTG CCCCGAGCCA ATGATTGAAG TTACTGTGGG GCTTGAAGTT
  AACCCTTTCT TGGGTCCTCA GAATATTGAG CCTCTTCCAC ATAACTTCCC TTGACCGGCG
  Y
  CCACCTACTC GGGGTAGTGC ACGCTGGAGA GGAGTGCCAG CATTATTTGT GCATTCGGAT
  CACTATAGAA ACAGAAAGAT GGCTAATCTC TGAAAACAAG CAGTCCCAGT CCTGGGCGCC
  CGCTCCACAC TGTCCAAAAA GTACAAGATG CGGTTGTGAG TACAGCTTCC AGAAACAGTT
  TCGAGCCGTG CTGGCACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46391594	mCV22924088	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136396198	ENSMUSSNP3915372	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30274393					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44391203 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1172 bp distal
Cpgi21660	CpG island 21660	413 bp distal
Cpgi21661	CpG island 21661	1 bp proximal
Gm10023	predicted gene 10023	within coordinates
Gm47204	predicted gene, 47204	109 bp upstream
Gm47205	predicted gene, 47205	1608 bp downstream
Rr368728	regulatory region 368728	170 bp upstream
Rr677665	regulatory region 677665	1437 bp distal
Rr677666	regulatory region 677666	1912 bp distal
Rr677667	regulatory region 677667	145 bp distal
Rr677668	regulatory region 677668	523 bp distal
Rr677669	regulatory region 677669	within coordinates
Rr677670	regulatory region 677670	344 bp proximal
Tssr89164	transcription start site region 89164	163 bp upstream
Tssr89165	transcription start site region 89165	126 bp upstream