rs30275139 SNP Detail

Summary

• ID
  rs30275139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20810420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC GTGGATTCCA GACTAGCCTG
  Y
  GCTCCATGCG ACTCTGTCTC CAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46390801	mCV27566147	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss136224735	ENSMUSSNP5584804	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss322873592	CHEV_9_20703568	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30275139					SNP	T	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20810420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21406	CpG island 21406	347 bp distal
Eif3g	eukaryotic translation initiation factor 3, subunit G	534 bp upstream
Rr674623	regulatory region 674623	11 bp distal
Rr674624	regulatory region 674624	428 bp distal
Rr674625	regulatory region 674625	994 bp proximal
Tssr2789	transcription start site region 2789	549 bp upstream
Tssr2790	transcription start site region 2790	538 bp upstream
Tssr83934	transcription start site region 83934	1209 bp downstream
Tssr88340	transcription start site region 88340	493 bp upstream