rs30275274 SNP Detail

Summary

• ID
  rs30275274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6166975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCACTCC CATAGAACAT
  ATTCTTATAT TTCTTTACTT TTTTGTGATC ACAACAGGGA CTGCAAAGCT GTGCTTATTT
  TTAAGTTTGT GTGGTGGCTA TATGTGTGAA GCCCAAAAGC TAACACTGAA TTTCTCTATT
  GTTTGTTTTG AGCCGGTATC TCTGGCTGAA TCATGAGCTT TCCCTTTACA CAAGTTGAAA
  Y
  CCGGGGATCT ACCTGTTTGC GTTACACAGC ACTGGAGCTT CAAATGCATA CCACAGTGTG
  CACAAGTGTG ACACAAGTGT GATGTGTGTC TTCAGGTACT TCGCTGACTG TACCATCGCC
  TGTGAGCCTA CTTTCTATGT TGCTTCTCTG TGTCTTTCTC CAGGGCAGAT TATATACTTA
  AACAGTATAA ACAGATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46391695	mCV22333223	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss50640679	NES14035663	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	T		C	T	T	T	C	T	T	C	T
ss136187900	ENSMUSSNP5095185	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30275274					SNP	C	C	T	C	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640679	NES14035663	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6166975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	1425 bp proximal
Pdgfd	platelet-derived growth factor, D polypeptide	1609 bp upstream
Tssr2757	transcription start site region 2757	1703 bp upstream
Tssr83664	transcription start site region 83664	1474 bp upstream
Tssr83665	transcription start site region 83665	1495 bp upstream
Tssr83666	transcription start site region 83666	1578 bp upstream
Tssr83667	transcription start site region 83667	1595 bp upstream
Tssr83668	transcription start site region 83668	1626 bp upstream
Tssr83669	transcription start site region 83669	1663 bp upstream