rs30276048 SNP Detail

Summary

• ID
  rs30276048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72713262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA ATGTAATTTA AAAGGCAATA
  R
  TTCCATATGT CATTTTTCTT TCTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46391209	mCV23625696	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss136623960	ENSMUSSNP7248110	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323003006	CHEV_9_72653787	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30276048					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72713262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22020	CpG island 22020	753 bp proximal
Prtg	protogenin	1294 bp upstream
Rr206710	regulatory region 206710	138 bp proximal
Tssr86048	transcription start site region 86048	1152 bp upstream
Tssr86049	transcription start site region 86049	1179 bp upstream
Tssr86050	transcription start site region 86050	1213 bp upstream
Tssr86051	transcription start site region 86051	1242 bp upstream
Tssr86052	transcription start site region 86052	1321 bp upstream
Tssr86053	transcription start site region 86053	1355 bp upstream