rs30276549 SNP Detail

Summary

• ID
  rs30276549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41490901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAAGCTCG AGAGAATTTT CGAAGAGGCT TGTCTTCAAG
  ATATGGAAGG AAGTGAGAGA TGACAGCCTG CAAGCTTTGT ATGCCAGTGC CTGGCAGGGC
  R
  GGGGGGGGGG GAGATGCGAG GGAAGCCAAG TGGATTCTCA GAAAAAGGGG GGAAGCCATC
  AAAGAGCTAA AGGTGATTAG AGGGGGATAT CGATTCCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46390421	mCV23834241	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss136358657	ENSMUSSNP7221215	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss322927316	CHEV_9_41387688	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30276549					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41490901 () rs orientation: forward

Symbol	Name	Function Class
Gm51670	predicted gene, 51670	334 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677060	regulatory region 677060	101 bp distal
Rr677061	regulatory region 677061	within coordinates
Rr677062	regulatory region 677062	644 bp proximal
Rr677063	regulatory region 677063	1747 bp proximal
Rr677064	regulatory region 677064	1861 bp proximal
Tssr84512	transcription start site region 84512	55 bp upstream
Tssr84513	transcription start site region 84513	83 bp upstream
Tssr84514	transcription start site region 84514	245 bp upstream
Tssr84515	transcription start site region 84515	330 bp upstream
Tssr84516	transcription start site region 84516	365 bp upstream
Tssr84517	transcription start site region 84517	398 bp upstream
Tssr84518	transcription start site region 84518	1098 bp upstream
Tssr84519	transcription start site region 84519	1146 bp upstream
Tssr84520	transcription start site region 84520	1298 bp upstream
Tssr84521	transcription start site region 84521	1339 bp upstream
Tssr84522	transcription start site region 84522	1363 bp upstream
Tssr84523	transcription start site region 84523	1461 bp upstream
Tssr84524	transcription start site region 84524	1642 bp upstream
Tssr84525	transcription start site region 84525	1695 bp upstream
Tssr84526	transcription start site region 84526	1726 bp upstream
Tssr88995	transcription start site region 88995	82 bp upstream
Tssr88996	transcription start site region 88996	42 bp upstream
Tssr88997	transcription start site region 88997	1181 bp downstream