rs30276653 SNP Detail

Summary

• ID
  rs30276653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121708754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACAAAAG AAAGTTAGCC
  TGGCTTAGGA TCTCCGGGCC TTGTGCTTGA TCCAGCACAA GAATGCAATA AATGTTGAGA
  AACAATAGCT AAAGAGCCTT GCATCTCCAA CACTGGCAAT GAGTTTAACA AGTCCCCATC
  CCCCGTCCTC CCCCAATTAC AGAGGAAATT AGAAAGCTAG ATGTCCTTTA AACTTAACTG
  Y
  TGCAATTTTG TATAACCGGG AATTCTGAAG TTCATAAATG AAGGGCATTT TACCTTCTCC
  TGACATATTG TGATCCAAAC AGTGGCAAGG AAATAAACGT ACCCTCCTCA CCTCGCTGGG
  GAGGGAGGGG GAAAACGATG AATGCTTTGG GATTATGAGC TTCAGTGATT ATAAATCAGC
  ATCTGTGGTG AAATGTTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46932054	NES10679208	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	T	T	T	T	T
ss135731731	ENSMUSSNP3593207	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30276653					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932054	NES10679208	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121708754 () rs orientation: forward

Symbol	Name	Function Class
Gm34119	predicted gene, 34119	within coordinates
Rr584204	regulatory region 584204	within coordinates
Rr584205	regulatory region 584205	1728 bp proximal