rs30277105 SNP Detail

Summary

• ID
  rs30277105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144995422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG AGATAGTGGT ACAAATGTTA
  Y
  TGTTGGATAC AAAGTTACAT AAATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss45913431	mCV23990584	ABI	CRAMUS_MOUSE	f	SNP		T				C		C
ss48141288	NES11826393	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C		T	C	C		C	T
ss322067443	CHEV_6_144998216	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs30277105					SNP	T	T	C	T	C	C	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141288	NES11826393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144995422 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	483 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Rr145932	regulatory region 145932	421 bp distal
Rr148333	regulatory region 148333	979 bp proximal
Tssr2055	transcription start site region 2055	617 bp upstream
Tssr59519	transcription start site region 59519	1148 bp downstream
Tssr64034	transcription start site region 64034	1999 bp upstream
Tssr64035	transcription start site region 64035	1939 bp upstream
Tssr64036	transcription start site region 64036	1104 bp upstream
Tssr64037	transcription start site region 64037	1054 bp upstream
Tssr64038	transcription start site region 64038	1026 bp upstream
Tssr64039	transcription start site region 64039	1009 bp upstream
Tssr64040	transcription start site region 64040	990 bp upstream
Tssr64041	transcription start site region 64041	967 bp upstream
Tssr64042	transcription start site region 64042	949 bp upstream
Tssr64043	transcription start site region 64043	891 bp upstream
Tssr64044	transcription start site region 64044	875 bp upstream
Tssr64045	transcription start site region 64045	843 bp upstream