rs30277279 SNP Detail

Summary

• ID
  rs30277279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37089183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATG AGTAAAAGTC TTGGGGAACT
  Y
  GGAGCCTAGG GGAGGAAAAC TCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46391133	mCV24874286	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T		C
ss61379695	NES16766907	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	C	T	T		T	T		C
ss136309022	ENSMUSSNP1735309	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss322906205	CHEV_9_36985472	CHEVERUD	SCREENING_POP	f	SNP													T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30277279					SNP	C	C	C	C	C	T	C	T	C	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61379695	NES16766907	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37089183 () rs orientation: forward

Symbol	Name	Function Class
Gm67648	predicted gene, 67648	within coordinates
Rr401317	regulatory region 401317	499 bp downstream
Rr676635	regulatory region 676635	1467 bp distal
Rr676636	regulatory region 676636	484 bp distal
Rr676637	regulatory region 676637	607 bp distal
Rr676638	regulatory region 676638	within coordinates
Rr676639	regulatory region 676639	693 bp proximal