rs30278288 SNP Detail

Summary

• ID
  rs30278288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121709806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCTCTG TGTAGCCCTA
  GCTATCCTGG AACTCACTCT GTAGACCAGG CTGGCCTCGA ACTCAGAAAT CTGCCTGCCT
  CTGCCTCCCA AGTGCTGGGA TTAAAGGCGT GTGTCACCAC CGCCCGGCCG ATAGAAATTT
  GTTATCTCAT GGCTCATTGT ATTTTTATGA ATTCTCTGGG GTGGAACAAA CAAGCAAAGA
  Y
  GATTTTTAAA GAATCATTTA CTTGTTTTGT GTAAAATGTT ATAAACACAA ATAAATAAAA
  CTCCCAGGAA AGTATCTGAG AACGGAGGAA ACAGGAGAGG GGTTCAGAGA GGAGAAGAGC
  TGAGAGTCCT GATTGAGAAT ACGTAAGCTG AAGAGGGCCA AAGACAAGCT GACTTTTAAA
  AGATTTATTT ATTTTTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46932069	NES10679138	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30278288					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932069	NES10679138	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121709806 () rs orientation: forward

Symbol	Name	Function Class
Gm34119	predicted gene, 34119	within coordinates
Rr584204	regulatory region 584204	594 bp distal
Rr584205	regulatory region 584205	676 bp proximal