rs30278698 SNP Detail

Summary

• ID
  rs30278698
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45313030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGATGAGA TTAAGAAGGA
  ACCCAAAAAT GAGAGCCAGC AAGAGGAGAA GTTAAGGCTC TTGCCACAAA GCCTGGCAAT
  GTGAACTCAA TCTCTGGGCC CTACGAAGTG TCCTCTGGTC TGCGGACATC TACATGACCC
  ATGCAGGCTC TCATACACAT AATGGATAAC TAAATACATA AACATAATAA GAAAATTTAC
  R
  AAGGGACACA AAAAGGACCT GGGCTTAGAA ATCTGTATTC AGAGGACCTT GGGCAGGAGA
  GCAAATGGTT TTATGAGTGA AGGGCTGGGT GGGGGGCACA GGGTGTCTCT TAGGAAACTG
  GATGACTTCT TTCACAGCCC TAAAGTCGGG AAGGAGGAAT TTGTGGTGGA CTTGTGGGGA
  AGCAGGAGTC CTGCTGAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46391439	mCV25163645	ABI	CRAMUS_MOUSE	f	SNP		A						G		G
ss52013376	NES15030335	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	A	A	G	G	A	G
ss136411180	ENSMUSSNP5926598	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30278698					SNP	A	A	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013376	NES15030335	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45313030 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	171 bp proximal
Rr200381	regulatory region 200381	within coordinates
Tssr84783	transcription start site region 84783	833 bp upstream
Tssr84784	transcription start site region 84784	883 bp upstream
Tssr84785	transcription start site region 84785	1410 bp upstream
Tssr84786	transcription start site region 84786	1442 bp upstream
Tssr84787	transcription start site region 84787	1464 bp upstream
Tssr84788	transcription start site region 84788	1495 bp upstream
Tssr84789	transcription start site region 84789	1521 bp upstream