rs30278820 SNP Detail

Summary

• ID
  rs30278820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:116068046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCATTTCCAC ATGGGGTTGC TATTACTTTG CCTCCTTCAT ATAACTTTTA ATTCAGTGAC
  CAATGGAAAT CTACAGGCCC ACCAAGGCGC CATCATAGAC ACCAGGCCAG TGAGTAAAGC
  CAGTCTCACT GCCCCGCTCC GTCTCACTTT TTATTTTTAA GACAAGGACC TGTTACTTAG
  TCCAGGCTAG CCTTGATTCA ATTTACCATC TTCCTGACTT TGCCTCCCAG TGCTGGTGGG
  GTTAAAGGCG TGCGCCACCA AGGCTGGCTC ATGTTTGTGG ACACTTTACT TCTTCTTCTT
  Y
  TTTTTTTTTT TTTTTTTGAG ACAGGGTTTC TCTGTGTAGC CTTGGCTGTC CTGGAACTCA
  CTCTGTAGAC CAGGCTGGCC TCAAACTCAG AAATCCACCT ATCTCTGCCT CTCAAGTGCT
  GGGATTAAAG GCATGTGCCA CTACTGCCCA GATGTTTCTA TTATTTTTAA TAGCTTGCAA
  ATAGTTAGGT CTCATTTAAC GAAAACTTAA AAAATTTGTT TGTGTTGTTT TTTCCCTTCA
  TCTTCTTCCT CATCTCCCCT CTTCCCCTGT AGTTCTCTTC ACATCATGTG ACCTTTTGTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46389666	mCV23873295	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss137022408	ENSMUSSNP3325921	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30278820					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:116068046 () rs orientation: forward

Symbol	Name	Function Class
Gm31410	predicted gene, 31410	within coordinates
Rr383972	regulatory region 383972	683 bp upstream