rs30279204 SNP Detail

Summary

• ID
  rs30279204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79439327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGCAGC TCCAGACTAA
  AGACCATTTC CCTCCAAGCA CAGCACGTGA GCCCAGCTAC TACTAACTTC CTCTTTTGGG
  AGCTTAAAAA AAGGGATGTT CATTCATCAT GCAAATGAAG CCCAGGATGA CTTCTAGAAG
  CGGATGTGCT CTCAGTAAAC CCATAATAAA GTAGACAAGT ACAAATCTCT CCCTGCTTTT
  Y
  CTCCGCCTGC ACTCAAGTGC ACTCAACAGG TCCAGCAGCT TGCACTGACT CACACCATCT
  GCATCTCGAG CTGAGTTTAC AAGCAGCCCT GCCTTCACTA GTCACGAGCC CAGCTCATGT
  GGCTCTGGGT AAACCTTCAG CTGCAAGGTT GCTCTGACAT TGGCCGCACC ACCCTCTTAA
  TGGTTCTCAT GTGAGTAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45414050	mCV24189737	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss47031424	NES10775816	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	C	T	T	C	T
ss135372485	ENSMUSSNP492134	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30279204					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031424	NES10775816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79439327 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	within coordinates
Rr375221	regulatory region 375221	within coordinates
Rr578537	regulatory region 578537	1982 bp distal
Rr578538	regulatory region 578538	within coordinates
Tssr29583	transcription start site region 29583	within coordinates
Tssr33705	transcription start site region 33705	350 bp upstream
Tssr33706	transcription start site region 33706	332 bp upstream
Tssr33707	transcription start site region 33707	314 bp upstream
Tssr33708	transcription start site region 33708	292 bp upstream
Tssr33709	transcription start site region 33709	274 bp upstream
Tssr33710	transcription start site region 33710	236 bp upstream
Tssr33711	transcription start site region 33711	216 bp upstream
Tssr33712	transcription start site region 33712	178 bp upstream
Tssr33713	transcription start site region 33713	134 bp upstream
Tssr33714	transcription start site region 33714	40 bp downstream
Tssr33715	transcription start site region 33715	144 bp downstream
Tssr33716	transcription start site region 33716	821 bp downstream