rs30279825 SNP Detail

Summary

• ID
  rs30279825
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44388787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTA AACCCTTGGC TTTTGCTCCC
  S
  GCAGGCTTCT GCAAAGAGAG TCCCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46391848	mCV25082959	ABI	CRAMUS_MOUSE	f	SNP		G	C	G
ss136396144	ENSMUSSNP1910734	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322940979	CHEV_9_44285573	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30279825					SNP	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44388787 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	950 bp proximal
Cpgi21660	CpG island 21660	1666 bp proximal
Gm10023	predicted gene 10023	434 bp downstream
Gm22540	predicted gene, 22540	975 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	1187 bp distal
Rr203857	regulatory region 203857	1221 bp distal
Rr206312	regulatory region 206312	13 bp proximal
Rr209143	regulatory region 209143	387 bp distal