rs30280064 SNP Detail

Summary

• ID
  rs30280064
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44387926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATTTGT GTGTCATTTT
  TGTGCAGGGG CCCTGCTAAT CTTCTCTGTA ACATTTTTAT TTATTTGGGC ATGGGGGTGG
  GAGGTCCTGT CTCCACACGC ATGCCATAGA ACAGTGTGTG AGACTTCTCT CCTTCTGCCA
  TGCGGGTCTC TGGGATGGAG CTCAGGTCGT CAGACTTAGC AACAAGCACC TTTACCCACT
  S
  GCCGTCTTTT TTTCTTTTTC TTTTTTAACA TTTGAAGAAA CAGGCCTGAA AAGTGATTAG
  GCCGGGACCT TTCAGACCAG TCTTTCCTTG GGAGAATTTA TTATTTCCTT GAAGAACATA
  GAGAGGGCAA CCTCAGAAGT CTCTCTGGCA GAACTCTCCT GCTACGGCTT CTAGCAGATG
  TATACTGTCT CCCTGAGTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46391746	mCV25082934	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
ss136396108	ENSMUSSNP4437962	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30280064					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44387926 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1811 bp proximal
Gm10023	predicted gene 10023	1295 bp downstream
Gm22540	predicted gene, 22540	114 bp upstream
Gm47204	predicted gene, 47204	83 bp downstream
Rr195028	regulatory region 195028	326 bp distal
Rr203857	regulatory region 203857	360 bp distal
Rr206312	regulatory region 206312	874 bp proximal
Rr209142	regulatory region 209142	1726 bp distal
Rr209143	regulatory region 209143	within coordinates