rs30280092 SNP Detail

Summary

• ID
  rs30280092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121710223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCCCTGCT TGAGCATGAA TAGCCAAGGG ACAGTGGAGA
  ACAATCACAC AAAAGACAGA CGGATTTTGC CCAGGGTTCA TGATCGTGGA GGCCTTTCTG
  Y
  GCATGCTCTC CAAGAAAATC ATCAGACATT TACCTCTGTC CTCCCGCTGT TCAGAAGCAG
  ATCGCCATCT TCATCCCCAC CTCTTCAATT ATGGATGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46932093	NES10679088	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	C	T	T		C	T	C		T
ss135731767	ENSMUSSNP555408	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss320906991	CHEV_3_121619492	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30280092					SNP	C	C	T	T	T	T	T	C	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932093	NES10679088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121710223 () rs orientation: forward

Symbol	Name	Function Class
Gm34119	predicted gene, 34119	within coordinates
Rr584204	regulatory region 584204	1011 bp distal
Rr584205	regulatory region 584205	259 bp proximal