rs30280255 SNP Detail

Summary

• ID
  rs30280255
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127200588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGCACA CTGCCGAATT
  TTATAAATAA GATAGCCATT AGCCAAGCTT ATGGGGACTT GACAAATTGA TAACTGCCTC
  CAATTTTTTT CATATTAATA TTAGTTTTGT TTTATTTTGA AACAGACTCT CACTCTGTAA
  CCCTGGCTGG CCTGAGATTT ATTGGGGAAG ACCAAGCTGG CTTCAGACTC ACCGTTGAGT
  W
  GGCTGCCCTT GCCTCCCAAA TACTGAGATC GAAGGTGACT GCGCACCACC ATACCACACC
  CAGCTAACAA TAATTTTTTT AAGAGATTTG ACTATCTAAA GTGCCCATGA GTAAGCTCCT
  CCCTGAGAAA CAGGCAGTGT GGTCAAAGGA GGGCTCCTCA CCCTCACGCA TAGGGTATTG
  ATGTGCTCAA GTGTGGGCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45413955	mCV23997795	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T
ss135862614	ENSMUSSNP6990257	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
ss320953848	CHEV_3_127109857	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30280255					SNP	A	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127200588 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	1748 bp proximal
Gm52631	predicted gene, 52631	within coordinates
Rr584772	regulatory region 584772	within coordinates
Rr584773	regulatory region 584773	802 bp proximal
Tssr35571	transcription start site region 35571	1941 bp downstream
Tssr35572	transcription start site region 35572	1998 bp downstream