rs30280434 SNP Detail

Summary

• ID
  rs30280434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40367020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGC CTGCAGCCTG GCTCGAGGCT
  Y
  CCTCTCTCGG CTCCCTACCC TGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46392385	mCV24918381	ABI	CRAMUS_MOUSE	f	SNP	C				T		C
ss50677585	NES14010799	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		C	C	C	C		T	C	C	C		C
ss136330430	ENSMUSSNP2979622	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322916243	CHEV_9_40263309	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30280434					SNP	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677585	NES14010799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40367020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	299 bp distal
Rr676840	regulatory region 676840	within coordinates
Rr676841	regulatory region 676841	111 bp proximal
Tssr84449	transcription start site region 84449	403 bp downstream
Tssr84450	transcription start site region 84450	167 bp upstream
Tssr84451	transcription start site region 84451	1931 bp upstream
Tssr84452	transcription start site region 84452	1959 bp upstream
Tssr88934	transcription start site region 88934	340 bp upstream
Tssr88935	transcription start site region 88935	289 bp upstream
Tssr88936	transcription start site region 88936	268 bp upstream
Tssr88937	transcription start site region 88937	204 bp upstream
Tssr88938	transcription start site region 88938	50 bp downstream
Tssr88939	transcription start site region 88939	57 bp downstream
Tssr88940	transcription start site region 88940	113 bp downstream
Tssr88941	transcription start site region 88941	395 bp downstream
Tssr88942	transcription start site region 88942	413 bp downstream
Tssr88943	transcription start site region 88943	428 bp downstream
Tssr88944	transcription start site region 88944	471 bp downstream
Tssr88945	transcription start site region 88945	506 bp downstream
Tssr88946	transcription start site region 88946	588 bp downstream
Tssr88947	transcription start site region 88947	616 bp downstream
Tssr88948	transcription start site region 88948	663 bp downstream
Tssr88949	transcription start site region 88949	1748 bp downstream