rs30280460 SNP Detail

Summary

• ID
  rs30280460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTAACTATG TTGCCAATAC TCCAATCTCC ACTTTCCAGG
  CACGCAGCCA GGTGGCAGTG AAGAGCTACA AGGGTCTTCC GTGCTCATAA AAATGACTGC
  Y
  TCTAGCTTAA AGATTCAGAG TAAATTTCCA CCTATAAAAA GAAGCTGCGA CGAGATTCTT
  GTGTACGAAA CCAAGGGCAA AATACTGAGG GTGGAAAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46391062	mCV24902312	ABI	CRAMUS_MOUSE	f	SNP	C	C						T
ss50674823	NES14008198	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	C	C	C	T	C	T		C	C	T	C		T
ss136309805	ENSMUSSNP3232185	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss322906509	CHEV_9_37063681	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30280460					SNP	C	C	T	C	C	C	C	T	C	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674823	NES14008198	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	509 bp distal
Gm48081	predicted gene, 48081	within coordinates
Rr676656	regulatory region 676656	693 bp distal
Rr676657	regulatory region 676657	588 bp distal
Rr676658	regulatory region 676658	369 bp distal
Rr676659	regulatory region 676659	within coordinates
Rr676660	regulatory region 676660	39 bp distal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	683 bp upstream
Tssr88821	transcription start site region 88821	732 bp upstream
Tssr88822	transcription start site region 88822	704 bp upstream
Tssr88823	transcription start site region 88823	677 bp upstream
Tssr88824	transcription start site region 88824	654 bp upstream
Tssr88825	transcription start site region 88825	635 bp upstream
Tssr88826	transcription start site region 88826	543 bp upstream
Tssr88827	transcription start site region 88827	461 bp upstream
Tssr88828	transcription start site region 88828	431 bp upstream
Tssr88829	transcription start site region 88829	413 bp upstream
Tssr88830	transcription start site region 88830	385 bp upstream
Tssr88831	transcription start site region 88831	352 bp upstream