rs30281346 SNP Detail

Summary

• ID
  rs30281346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110363546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAG CAAAGCTCAT CTCTTACTTG
  Y
  AGTAGGAAAC CAGCATGGCT TTGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46390870	mCV25039849	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss136958612	ENSMUSSNP2733399	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323193661	CHEV_9_110436982	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30281346					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110363546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22381	CpG island 22381	1028 bp distal
Rr687132	regulatory region 687132	1871 bp distal
Rr687133	regulatory region 687133	456 bp distal
Rr687134	regulatory region 687134	1609 bp distal
Rr687135	regulatory region 687135	1380 bp distal
Rr687136	regulatory region 687136	693 bp proximal
Setd2	SET domain containing 2	within coordinates
Tssr3033	transcription start site region 3033	1750 bp downstream
Tssr87392	transcription start site region 87392	1878 bp downstream
Tssr87393	transcription start site region 87393	1838 bp downstream
Tssr87394	transcription start site region 87394	1786 bp downstream
Tssr91631	transcription start site region 91631	1700 bp upstream
Tssr91632	transcription start site region 91632	1677 bp upstream
Tssr91633	transcription start site region 91633	1652 bp upstream
Tssr91634	transcription start site region 91634	1632 bp upstream
Tssr91635	transcription start site region 91635	1539 bp upstream
Tssr91636	transcription start site region 91636	1520 bp upstream