rs30281831 SNP Detail

Summary

• ID
  rs30281831
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86763902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAGACCACC ACCAAAAAGT TATGTACGTA TTACTATATG ACCCCCGCAG TCCTGCACAG
  TATTTACCCA ATTGGGGGGG GGGGGAACCA GACACACACA TTTTTCTCTT TAAACTTTCA
  CTCAAAATTA GTAGCAGCTT ATATAATGGC CCCACACTGG AGGAAAACCA GTCTATTGAT
  AAATAGCTAA AGAAAACATG GCATATCCAC ACAACAGAAT ACTACTTAGC AATAACAAGA
  CAGAAATGAA CAACATGGAT GAATTTGAGA ATATACGATG CTTCATGAAA GAGGCCAAAT
  S
  ACCAGGACGT TATTTACTAT TTTGATCCAT TTATGTAACA GAGTAAGAAA GGTTTAAGTT
  CAAGACAGAA AATACACCAG ATGCCAAGGT TCAGGACTGG GGACTGACTT CAAAAGAAAA
  ACTATTTAAA ATGATAGAAA AGGTTTATAT CATGACTAAG GTGGTCGATA ACAACAGTAT
  GAATTTGGAC ACATAGAATT GGTGAATTTT ATTGCAAGTA AACGAGAACT CAGCATATCT
  GATAAAGAGC TGGAGTAGCC GTATTGGTAT TAGCTAAGGT AGACTTTATA GTAGGGATGT
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46391774	mCV24287776	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30281831					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86763902 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22106	CpG island 22106	753 bp distal
Rr684153	regulatory region 684153	1446 bp distal
Rr684154	regulatory region 684154	910 bp distal
Snap91	synaptosomal-associated protein 91	1195 bp upstream
Tssr90794	transcription start site region 90794	1477 bp upstream
Tssr90795	transcription start site region 90795	1437 bp upstream
Tssr90796	transcription start site region 90796	1382 bp upstream
Tssr90797	transcription start site region 90797	1365 bp upstream
Tssr90798	transcription start site region 90798	1347 bp upstream
Tssr90799	transcription start site region 90799	1190 bp upstream
Tssr90800	transcription start site region 90800	1137 bp upstream