rs30281974 SNP Detail

Summary

• ID
  rs30281974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121711239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGGCCAT ATTACTTAGA TACATGTATA TGCACATATG
  CAAATGTGTA TATATGTATA ATATTATGTG TATACACACA CAAAAACCTG TCAAAGAATA
  R
  ATTAGTTTTT AAAACACAAT TAAGGAAATC ATTCCATTTT TCTTACCCTT GGGCACTCTA
  CAGTCCTCTA TTGGGTCTCT ATATAGTTAC TACGCCATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss46932105	NES10678995	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	A		G	G		G		G
ss135731791	ENSMUSSNP271424	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G					A
ss320907000	CHEV_3_121620508	CHEVERUD	SCREENING_POP	f	SNP										G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30281974					SNP	A	G	G	G	G	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932105	NES10678995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121711239 () rs orientation: forward

Symbol	Name	Function Class
Gm34119	predicted gene, 34119	within coordinates
Rr584205	regulatory region 584205	81 bp distal