rs30281977 SNP Detail

Summary

• ID
  rs30281977
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121711259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATGTATA TGCACATATG CAAATGTGTA TATATGTATA
  ATATTATGTG TATACACACA CAAAAACCTG TCAAAGAATA GATTAGTTTT TAAAACACAA
  K
  TAAGGAAATC ATTCCATTTT TCTTACCCTT GGGCACTCTA CAGTCCTCTA TTGGGTCTCT
  ATATAGTTAC TACGCCATCA TAAGTAGTTT GTCCTCCTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss46932108	NES10678996	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	G		T		T		T
ss135731794	ENSMUSSNP6833845	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T					G
ss320907001	CHEV_3_121620528	CHEVERUD	SCREENING_POP	f	SNP									T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30281977					SNP	G	T	T	T	T	G	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932108	NES10678996	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121711259 () rs orientation: forward

Symbol	Name	Function Class
Gm34119	predicted gene, 34119	within coordinates
Rr584205	regulatory region 584205	101 bp distal