rs30281980 SNP Detail

Summary

• ID
  rs30281980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121711367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCACATA TGCAAATGTG
  TATATATGTA TAATATTATG TGTATACACA CACAAAAACC TGTCAAAGAA TAGATTAGTT
  TTTAAAACAC AATTAAGGAA ATCATTCCAT TTTTCTTACC CTTGGGCACT CTACAGTCCT
  CTATTGGGTC TCTATATAGT TACTACGCCA TCATAAGTAG TTTGTCCTCC TAATGCTAAT
  R
  TGGACCTCTA ACTCTACAGA ATACAGCATT CTGGGTTAGT CTCCTGACGG GCATTTCATC
  TGTTTCCTGT TGACTCCTCC GCTTTGACGA ACTGTTTGCA TCAGCCTATA AATATGCCCA
  AGCATCCTAG ACGCACACAT CCATAATCTT TTCCTGTTGT CTGTTAATTT TAGTAGCCTG
  TAACCTTGAT TTTGTTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46932111	NES10678997	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G	G	G	G	G
ss135731797	ENSMUSSNP4717164	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30281980					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932111	NES10678997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121711367 () rs orientation: forward

Symbol	Name	Function Class
Gm34119	predicted gene, 34119	within coordinates
Rr584205	regulatory region 584205	209 bp distal