rs30283909 SNP Detail

Summary

• ID
  rs30283909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78354673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTATAAGT TTTTTGGAGG
  TATTTACAGG AGTGTGGATG ACTCAAAGAC TGCATTACAA AAGTCCAGGG CAGTATGGAT
  GACAACTCAC AAAAGTTGTA TCCCTGAGCC CCCGAAGGAC TTGCACATCT GATGGTCCTG
  GAGTCTACCC CCTAGCAATG GTCCCTGCTT GTATAGCCTG AAGTAGGGGT GGGCCTGGCA
  R
  TTTATAAATC TTCCTGGGAC TGAACCTGTA AACTTTGTTC ACTTCTGGAC TTTTATGAGA
  CTCCCTCCTC TAGGAAGGAA TATTTCAACT CAGAGGAAAA CTTGTATATG CATATAAAAA
  TAGCTACTAG CAACAAAAGA CTGGCATTCC TTTAAAGTAG GGACAGAGCA CTTTGTAGGA
  GTTACACATT TTTTAATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46392921	mCV25043870	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30283909					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78354673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	589 bp proximal
Gm17324	predicted gene, 17324	474 bp downstream
Mto1	mitochondrial tRNA translation optimization 1	699 bp upstream
Rr401544	regulatory region 401544	646 bp upstream
Tssr86287	transcription start site region 86287	801 bp upstream