rs30283948 SNP Detail

Summary

• ID
  rs30283948
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84016527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTCCTTG ACCCTTGCAA
  GCAGAATTTC TTCCCTCTCT TTCTTCCAAG TTTTCCCCAG GACAAATGTT TACAAACTAT
  AAATAGAGTT GGATATTTAG AAAATCTAAT ACTTCAAGCA CATCTTCCCT CTCCCAAACC
  CTCCCTTTGA AACTAGCTGA TGATGGTGTT TCCTTTAACT TGGTATCTCT TTCAAATCCT
  M
  GGTCACTAGA AGTTTACTTT CAATCAATCA GAAATGCAAG CACTCAAGGA GAGCAGGAAA
  CCAGGAGTCT GCAAAACGAA GCCTTTATTA AGCTTATCTC TTGGCTGGAT CCTTTTCCCC
  CAAATCCTTC CCTTCTTGAC TTCCTTTGTG CTGCTTGCTT CCAGCTAATA CCAAAGACAC
  AAAAAGTATT CTGTCTAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49618034	NES12952777	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30283948					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49618034	NES12952777	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84016527 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Tssr12547	transcription start site region 12547	1520 bp upstream
Tssr12548	transcription start site region 12548	1343 bp upstream
Tssr12549	transcription start site region 12549	1321 bp upstream