rs30283949 SNP Detail

Summary

• ID
  rs30283949
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84016181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTTGTGGT CAGCTGTGCA
  GTAGGCAATT CGAGCCACCT GGAAGGTATC CATGTGCACT GTTGCCTCAC CCTTGTGGTC
  AAGGTGATGA AGCCACACTT GGAATGGCCG GATCTCTAGG AGGGCGTTGG CCGGGAAAAC
  ATCTTCTCGA GCCAGTGTGT GTTTCTTCCA GAGCTCAATG ACTGGCTTCT CGGTGCAACC
  R
  GACAAAAACT GCATGCCTGT GGTAGAGACT TTTCCCAGAT AGGTAACCTG CAGGTCGGTG
  ACAGGAAACA GAGAGAGAGG TCAGTATGGT GCACTGAGCT TACTCTGATA GGCAGAGCAA
  CTTGATAGAC ACCAAAGGGA TACACGTACT CCTTGACCCT TGCAAGCAGA ATTTCTTCCC
  TCTCTTTCTT CCAAGTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49618035	NES12952776	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30283949					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49618035	NES12952776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84016181 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Tssr12546	transcription start site region 12546	1761 bp upstream
Tssr12547	transcription start site region 12547	1174 bp upstream
Tssr12548	transcription start site region 12548	997 bp upstream
Tssr12549	transcription start site region 12549	975 bp upstream