rs30283952 SNP Detail

Summary

• ID
  rs30283952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84015941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGTTCC TTCAGCCATC
  ATCAGATTCC AATTCCTGGG AAGCCTCTTC AGATGAGCTG CTCCTATGGA TCCGCCCATC
  ACTCTTCATA CTGTGGAAAG TCTTCTTGAA TGCCTCCATC ATGGCGTGTG CCAGCTTCTT
  GGCCTCCAGC TTGCTCTCAC ATTGCACTGC ATGGCAGTCC ATCTGGTAAG AGAGGTCATC
  R
  TTGATCTCTC TGTACACCCA GGCGAAGATG TTGGGGCTCA CGTTGTGGTC AGCTGTGCAG
  TAGGCAATTC GAGCCACCTG GAAGGTATCC ATGTGCACTG TTGCCTCACC CTTGTGGTCA
  AGGTGATGAA GCCACACTTG GAATGGCCGG ATCTCTAGGA GGGCGTTGGC CGGGAAAACA
  TCTTCTCGAG CCAGTGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49618038	NES12952773	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30283952					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49618038	NES12952773	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84015941 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Tssr12546	transcription start site region 12546	1521 bp upstream
Tssr12547	transcription start site region 12547	934 bp upstream
Tssr12548	transcription start site region 12548	757 bp upstream
Tssr12549	transcription start site region 12549	735 bp upstream