rs30284480 SNP Detail

Summary

• ID
  rs30284480
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99758897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCTCCCAG GTTGGCTTTA GGCGGCGCCT CCACCTGTAA
  TCCAGGACGC TCTGCGGAGC AGTTCTGGGT CCCTGGGGGT CGGAGCCAAG AGCTTTGAGC
  S
  GAGACCAGGA TGCTTCATGC GGGCTTCGCA GAGGTTTAGA GTCCTGATTG GCAAGCCCTT
  AACACTCTTC ACTTTGGGGG CCCTTGCCAC TAGGACTCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46393691	mCV22284214	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss136852111	ENSMUSSNP6560212	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss323137454	CHEV_9_99777263	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30284480					SNP	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99758897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	374 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	120 bp downstream
Rr685463	regulatory region 685463	1116 bp distal
Rr685464	regulatory region 685464	685 bp distal
Rr685465	regulatory region 685465	184 bp distal
Rr685466	regulatory region 685466	939 bp proximal
Sox14	SRY (sex determining region Y)-box 14	674 bp upstream
Tssr91083	transcription start site region 91083	651 bp upstream
Tssr91084	transcription start site region 91084	632 bp upstream