rs30285268 SNP Detail

Summary

• ID
  rs30285268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86427162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGACAAT ATGCTATAGC
  AGGCAAGTCA TGAGCAAGGA GCTCAATATA AAGAAAGGCT AGGAAGTCAG ACCAGCTTCA
  TCTCTCCAGA AGTTATTTTT TAAAGTAATA TAGAAGATTT AAACACACAG CTTTATATTA
  ATGGTAATAC TGGTTATTTT ACCTTCTAAA ATTCACAGTC CTAAGTGTCT ACAGCTTTTC
  R
  GCACCAAAGA AAGGTCTAGG TGCTTTGCCC TGTTCCTCAG TGTGTATGTC ATGGGGTATT
  TACTCATTCT AAATAAGCAA TGATCACTTT CAGATGACTA GCTGGCCTTC TGCTTCCCTT
  CCTTCTTATA GCTCGAGTAG CCGTGGCCCA GAGCAGTTCT CTCAATCTTT TTGCAAACCG
  GGATGTGGAG CTAGAACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46393699	mCV24274697	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss61435735	NES16815195	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G		G	G	G	G		A
ss136757206	ENSMUSSNP4305980	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss323056644	CHEV_9_86438716	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30285268					SNP	A	A	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61435735	NES16815195	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86427162 () rs orientation: forward

Symbol	Name	Function Class
D9Mit111	DNA segment, Chr 9, Massachusetts Institute of Technology 111	1404 bp proximal
Dop1a	DOP1 leucine zipper like protein A	within coordinates
Gm17530	predicted gene, 17530	1573 bp downstream
Rr211041	regulatory region 211041	1362 bp distal
Tssr86395	transcription start site region 86395	121 bp upstream
Tssr86396	transcription start site region 86396	147 bp upstream